Fine-structure in the nonthermal X-ray emission of SNR RX J1713.7-3946 revealed by Chandra

We present morphological and spectroscopic studies of the northwest rim of the supernova remnant RX J1713.7-3946 based on observations by the Chandra X-ray observatory. We found a complex network of nonthermal (synchrotron) X-ray filaments, as well as a 'void' type structure -- a dim region of a circular shape -- in the northwest rim. It is remarkable that despite distinct brightness variations, the X-ray spectra everywhere in this region can be well fitted with a power-law model with photon index around 2.3. We briefly discuss some implications of these results and argue that the resolved X-ray features in the northwest rim may challenge the perceptions of standard (diffusive shock-acceleration) models concerning the production, propagation and radiation of relativistic particles in supernova remnants.Comment: 8 pages, 9 figures; accepted for publication in A&A; significant additions for publication in Main journal (previous version was for A&A Letter); a manuscript (as a single PDF file, 501kb) including all figures is available at http://www.astro.isas.ac.jp/~uchiyama/publication/h4106.pd

Allometry and growth of eight tree taxa in United Kingdom woodlands.

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0As part of a project to develop predictive ecosystem models of United Kingdom woodlands we have collated data from two United Kingdom woodlands - Wytham Woods and Alice Holt. Here we present data from 582 individual trees of eight taxa in the form of summary variables relating to the allometric relationships between trunk diameter, height, crown height, crown radius and trunk radial growth rate to the tree's light environment and diameter at breast height. In addition the raw data files containing the variables from which the summary data were obtained. Large sample sizes with longitudinal data spanning 22 years make these datasets useful for future studies concerned with the way trees change in size and shape over their life-span

An Extended Radio Counterpart of TeV J2032+4130?

We carried out a 5-pointing mosaic observation of TeV J2032+4130 at 1.4 and 4.8 GHz with the VLA in April of 2003. The analysis of the 4.8GHz data indicate weak wispy shell-like radio structure(s) which are at least partially non-thermal. The radio data is compatible with one or more young supernova remnants or perhaps the signature of large scale cluster shocks in this region induced by the violent action of the many massive stars in Cyg OB2.Comment: Proc. 1st GLAST Symp. Feb 5-8, 2007, Stanford C

De novo structural modeling and computational sequence analysis of a bacteriocin protein isolated from Rhizobium leguminosarum bv. viciae strain LC-31

Bacteriocins produced by different groups of bacteria are ribosomally synthesized peptides or proteins with antimicrobial and specific antagonistic bacterial interaction activity. Rhizobium leguminosarum is a Gram-negative soil bacterium which plays an important role in nitrogen fixation in leguminose plants. Bacteriocins produced by different strains of R. leguminosarum are known to impart antagonistic effects on other closely related strains. Recently, a bacteriocin gene was isolated from R. leguminosarum bv. viceae strain LC-31. Our study was aimed towards computational proteomic analysis and 3D structural modeling of this novel bacteriocin protein encoded by the earlier aforementioned gene. Different bioinformatics tools and machine learning techniques were used for protein structural classification. De novo protein modeling was performed by using I-TASSER server. The final model obtained was accessed by PROCHECK and DFIRE2, which confirmed that the final model is reliable. Until complete biochemical and structural data of bacteriocin protein produced by R. leguminosarum bv. viceae strain LC-31 are determined by experimental means, this model can serve as a valuable reference for characterizing this multifunctional protein.Key words: Bacteriocin, rhizobium, protein modelling, nodulation, symbiosis, nitrogen fixation

Field Studies in the Lynnhaven River for Calibration of a Tidal Prism Water Quality Model

Under the Virginia Coastal Resources Management Program Grants (VCRMPG) for FY \u2793, a tidal prism water quality model has been developed for small coastal basins and tidal creeks. The rationale of the model development is provided and the model is described in detail in Kuo & Park ( 1994). The tidal prism model uses the concept of tidal flushing for physical transport processes. The nutrient and phytoplankton kinetics are mostly from the Chesapeake Bay three-dimensional water quality model (Cereo & Cole 1994), and the model also includes the sediment process model of the main Bay (DiToro & Fitzpatrick 1993). The model has twenty four water column and twenty seven sediment state variables (Table 1-1). The model, being a generic model applicable to any small coastal basins and tidal creeks, and operational on a personal computer, should provide a tool to state and local agencies for water quality management of Virginia\u27s small coastal basins

Multi-heme Cytochromes in Shewanella oneidensis MR-1:Structures, functions and opportunities

Multi-heme cytochromes are employed by a range of microorganisms to transport electrons over distances of up to tens of nanometers. Perhaps the most spectacular utilization of these proteins is in the reduction of extracellular solid substrates, including electrodes and insoluble mineral oxides of Fe(III) and Mn(III/IV), by species of Shewanella and Geobacter. However, multi-heme cytochromes are found in numerous and phylogenetically diverse prokaryotes where they participate in electron transfer and redox catalysis that contributes to biogeochemical cycling of N, S and Fe on the global scale. These properties of multi-heme cytochromes have attracted much interest and contributed to advances in bioenergy applications and bioremediation of contaminated soils. Looking forward there are opportunities to engage multi-heme cytochromes for biological photovoltaic cells, microbial electrosynthesis and developing bespoke molecular devices. As a consequence it is timely to review our present understanding of these proteins and we do this here with a focus on the multitude of functionally diverse multi-heme cytochromes in Shewanella oneidensis MR-1. We draw on findings from experimental and computational approaches which ideally complement each other in the study of these systems: computational methods can interpret experimentally determined properties in terms of molecular structure to cast light on the relation between structure and function. We show how this synergy has contributed to our understanding of multi-heme cytochromes and can be expected to continue to do so for greater insight into natural processes and their informed exploitation in biotechnologies

Deeper Chandra Follow-up of Cygnus TeV Source Perpetuates Mystery

A 50 ksec Chandra observation of the unidentified TeV source in Cygnus reported by the HEGRA collaboration reveals no obvious diffuse X-ray counterpart. However, 240 Pointlike X-ray sources are detected within or nearby the extended TeV J2032+4130 source region, of which at least 36 are massive stars and 2 may be radio emitters. That the HEGRA source is a composite, having as counterpart the multiple point-like X-ray sources we observe, cannot be ruled out. Indeed, the distribution of point-like X-ray sources appears non-uniform and concentrated broadly within the extent of the TeV source region. We offer a hypothesis for the origin of the very high energy gamma-ray emission in Cyg OB2 based on the local acceleration of TeV range cosmic rays and the differential distribution of OB vs. less massive stars in this association.Comment: Substantially revised version; incorporates referee suggestions & expanded discussio